WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:F53B2.6 Sequence Name  F53B2.6
Length (nt)  1245   Chromosome Location  IV: 12542216-12542316
Chromosome . Primary Identifier  IV Chromosome Location . Start  12542216
Chromosome Location . End  12542316
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F53B2.6

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE17851 HAM-1 46.2 414 Caenorhabditis elegans
 

Other

33 RNAi

WormBase ID
WBRNAi00048080
WBRNAi00015478
WBRNAi00032670
WBRNAi00070180
WBRNAi00107357
WBRNAi00106761
WBRNAi00104566
WBRNAi00104568
WBRNAi00104567
WBRNAi00104570
WBRNAi00104569
WBRNAi00104572
WBRNAi00104571
WBRNAi00104574
WBRNAi00104573
WBRNAi00104576
WBRNAi00104575
WBRNAi00104578
WBRNAi00104577
WBRNAi00104580
WBRNAi00104579
WBRNAi00104582
WBRNAi00104581
WBRNAi00104584
WBRNAi00104583
WBRNAi00104586
WBRNAi00104585
WBRNAi00104588
WBRNAi00104587
WBRNAi00104590

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:F53B2.6 12542216 12542316 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001820 ham-1 F53B2.6 Caenorhabditis elegans

5 Locations


Feature . Primary Identifier
Start End Strand
CDS:F53B2.6 12542216 12542316 1
CDS:F53B2.6 12542394 12542551 1
CDS:F53B2.6 12542871 12543043 1
CDS:F53B2.6 12543447 12543826 1
CDS:F53B2.6 12544898 12545330 1

1 Sequence

Length
1245

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F53B2.6.1 F53B2.6.1 1685   IV: 12542183-12545737