WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y55D9A.1b.1 Sequence Name  Y55D9A.1b.1
Length (nt)  2871   Chromosome Location  IV: 12605695-12614724
Chromosome . Primary Identifier  IV Chromosome Location . Start  12605695
Chromosome Location . End  12614724 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y55D9A.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013223 efa-6 Y55D9A.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y55D9A.1b Y55D9A.1b 2457   IV: 12606104-12606289

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y55D9A.1b.1 12605695 12614724 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon147866   595   IV: 12605695-12606289 Caenorhabditis elegans
Exon147871   506   IV: 12606959-12607464 Caenorhabditis elegans
Exon147875   533   IV: 12609868-12610400 Caenorhabditis elegans
Exon147879   184   IV: 12610454-12610637 Caenorhabditis elegans
Exon147883   235   IV: 12610756-12610990 Caenorhabditis elegans
Exon147887   122   IV: 12611295-12611416 Caenorhabditis elegans
Exon147892   153   IV: 12611800-12611952 Caenorhabditis elegans
Exon147895   240   IV: 12613390-12613629 Caenorhabditis elegans
Exon147897   148   IV: 12614050-12614197 Caenorhabditis elegans
Exon147900   155   IV: 12614570-12614724 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y55D9A.1b.1 12605695 12614724 -1

1 Sequence

Length
2871

1 Sequence Ontology Term

Identifier Name Description
transcript