WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y45F10D.13a.1 Sequence Name  Y45F10D.13a.1
Length (nt)  3164   Chromosome Location  IV: 13750334-13770495
Chromosome . Primary Identifier  IV Chromosome Location . Start  13750334
Chromosome Location . End  13770495 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y45F10D.13a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012891 sorb-1 Y45F10D.13 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y45F10D.13a Y45F10D.13a 3018   IV: 13750336-13750374

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y45F10D.13a.1 13750334 13770495 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon151466   41   IV: 13750334-13750374 Caenorhabditis elegans
Exon151467   205   IV: 13750423-13750627 Caenorhabditis elegans
Exon151472   131   IV: 13751043-13751173 Caenorhabditis elegans
Exon151482   854   IV: 13752481-13753334 Caenorhabditis elegans
Exon151487   101   IV: 13754128-13754228 Caenorhabditis elegans
Exon151499   345   IV: 13755691-13756035 Caenorhabditis elegans
Exon151540   138   IV: 13761780-13761917 Caenorhabditis elegans
Exon151561   127   IV: 13765817-13765943 Caenorhabditis elegans
Exon151569   159   IV: 13766579-13766737 Caenorhabditis elegans
Exon151575   205   IV: 13766993-13767197 Caenorhabditis elegans
Exon151586   311   IV: 13768865-13769175 Caenorhabditis elegans
Exon151594   234   IV: 13769294-13769527 Caenorhabditis elegans
Exon151604   313   IV: 13770183-13770495 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y45F10D.13a.1 13750334 13770495 1

1 Sequence

Length
3164

1 Sequence Ontology Term

Identifier Name Description
transcript