WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y37A1C.1f.1 Sequence Name  Y37A1C.1f.1
Length (nt)  4063   Chromosome Location  IV: 14107720-14115715
Chromosome . Primary Identifier  IV Chromosome Location . Start  14107720
Chromosome Location . End  14115715 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y37A1C.1f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012543 nkcc-1 Y37A1C.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y37A1C.1f Y37A1C.1f 3561   IV: 14108149-14108284

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y37A1C.1f.1 14107720 14115715 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon153171   565   IV: 14107720-14108284 Caenorhabditis elegans
Exon153181   413   IV: 14108342-14108754 Caenorhabditis elegans
Exon153189   73   IV: 14109105-14109177 Caenorhabditis elegans
Exon153197   184   IV: 14109226-14109409 Caenorhabditis elegans
Exon153209   236   IV: 14110635-14110870 Caenorhabditis elegans
Exon153218   266   IV: 14110916-14111181 Caenorhabditis elegans
Exon153227   470   IV: 14111793-14112262 Caenorhabditis elegans
Exon153235   232   IV: 14112539-14112770 Caenorhabditis elegans
Exon153243   497   IV: 14112915-14113411 Caenorhabditis elegans
Exon153251   184   IV: 14113464-14113647 Caenorhabditis elegans
Exon153258   312   IV: 14114280-14114591 Caenorhabditis elegans
Exon153267   372   IV: 14114971-14115342 Caenorhabditis elegans
Exon153275   144   IV: 14115407-14115550 Caenorhabditis elegans
Exon153280   115   IV: 14115601-14115715 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y37A1C.1f.1 14107720 14115715 -1

1 Sequence

Length
4063

1 Sequence Ontology Term

Identifier Name Description
transcript