WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y105C5B.2a.1 Sequence Name  Y105C5B.2a.1
Length (nt)  3132   Chromosome Location  IV: 15872933-15882377
Chromosome . Primary Identifier  IV Chromosome Location . Start  15872933
Chromosome Location . End  15882377 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y105C5B.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001549 gcy-25 Y105C5B.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y105C5B.2a Y105C5B.2a 3105   IV: 15872960-15873099

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:Y105C5B.2a.1 15872933 15882377 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon161939   167   IV: 15872933-15873099 Caenorhabditis elegans
Exon161941   186   IV: 15873496-15873681 Caenorhabditis elegans
Exon161948   91   IV: 15874325-15874415 Caenorhabditis elegans
Exon161955   148   IV: 15874926-15875073 Caenorhabditis elegans
Exon161957   109   IV: 15875123-15875231 Caenorhabditis elegans
Exon161961   169   IV: 15875601-15875769 Caenorhabditis elegans
Exon161963   294   IV: 15875920-15876213 Caenorhabditis elegans
Exon161968   342   IV: 15876882-15877223 Caenorhabditis elegans
Exon161972   72   IV: 15877514-15877585 Caenorhabditis elegans
Exon161976   180   IV: 15877639-15877818 Caenorhabditis elegans
Exon161982   187   IV: 15878250-15878436 Caenorhabditis elegans
Exon161988   159   IV: 15879242-15879400 Caenorhabditis elegans
Exon161991   178   IV: 15879622-15879799 Caenorhabditis elegans
Exon161996   144   IV: 15880331-15880474 Caenorhabditis elegans
Exon162000   124   IV: 15880720-15880843 Caenorhabditis elegans
Exon162004   174   IV: 15881241-15881414 Caenorhabditis elegans
Exon162006   110   IV: 15881545-15881654 Caenorhabditis elegans
Exon162010   154   IV: 15881831-15881984 Caenorhabditis elegans
Exon162013   144   IV: 15882234-15882377 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:Y105C5B.2a.1 15872933 15882377 1

1 Sequence

Length
3132

1 Sequence Ontology Term

Identifier Name Description
transcript