WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y105C5B.21e.1 Sequence Name  Y105C5B.21e.1
Length (nt)  4061   Chromosome Location  IV: 15997839-16026847
Chromosome . Primary Identifier  IV Chromosome Location . Start  15997839
Chromosome Location . End  16026847 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y105C5B.21e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002175 jac-1 Y105C5B.21 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y105C5B.21e Y105C5B.21e 3771   IV: 15998129-15998405

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y105C5B.21e.1 15997839 16026847 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon162602   567   IV: 15997839-15998405 Caenorhabditis elegans
Exon162614   169   IV: 15998926-15999094 Caenorhabditis elegans
Exon162622   165   IV: 15999150-15999314 Caenorhabditis elegans
Exon162630   1104   IV: 15999764-16000867 Caenorhabditis elegans
Exon162642   180   IV: 16001755-16001934 Caenorhabditis elegans
Exon162654   432   IV: 16002467-16002898 Caenorhabditis elegans
Exon162672   181   IV: 16004382-16004562 Caenorhabditis elegans
Exon162686   338   IV: 16005253-16005590 Caenorhabditis elegans
Exon162696   126   IV: 16005925-16006050 Caenorhabditis elegans
Exon162732   198   IV: 16011898-16012095 Caenorhabditis elegans
Exon162753   229   IV: 16014313-16014541 Caenorhabditis elegans
Exon162774   154   IV: 16017337-16017490 Caenorhabditis elegans
Exon162784   63   IV: 16018899-16018961 Caenorhabditis elegans
Exon162839   155   IV: 16026693-16026847 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y105C5B.21e.1 15997839 16026847 -1

1 Sequence

Length
4061

1 Sequence Ontology Term

Identifier Name Description
transcript