WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:Y105C5B.21e Sequence Name  Y105C5B.21e
Length (nt)  3771   Chromosome Location  IV: 15998129-15998405
Chromosome . Primary Identifier  IV Chromosome Location . Start  15998129
Chromosome Location . End  15998405
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y105C5B.21e

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE50117 JAC-1, isoform e 138.5 1256 Caenorhabditis elegans
 

Other

6 RNAi

WormBase ID
WBRNAi00055199
WBRNAi00036476
WBRNAi00080604
WBRNAi00101414
WBRNAi00092918
WBRNAi00101432

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:Y105C5B.21e 15998129 15998405 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002175 jac-1 Y105C5B.21 Caenorhabditis elegans

14 Locations


Feature . Primary Identifier
Start End Strand
CDS:Y105C5B.21e 15998129 15998405 -1
CDS:Y105C5B.21e 15998926 15999094 -1
CDS:Y105C5B.21e 15999150 15999314 -1
CDS:Y105C5B.21e 15999764 16000867 -1
CDS:Y105C5B.21e 16001755 16001934 -1
CDS:Y105C5B.21e 16002467 16002898 -1
CDS:Y105C5B.21e 16004382 16004562 -1
CDS:Y105C5B.21e 16005253 16005590 -1
CDS:Y105C5B.21e 16005925 16006050 -1
CDS:Y105C5B.21e 16011898 16012095 -1
CDS:Y105C5B.21e 16014313 16014541 -1
CDS:Y105C5B.21e 16017337 16017490 -1
CDS:Y105C5B.21e 16018899 16018961 -1
CDS:Y105C5B.21e 16026693 16026847 -1

1 Sequence

Length
3771

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y105C5B.21e.1 Y105C5B.21e.1 4061   IV: 15997839-16026847