WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y105C5B.21a.1 Sequence Name  Y105C5B.21a.1
Length (nt)  4055   Chromosome Location  IV: 15997839-16026847
Chromosome . Primary Identifier  IV Chromosome Location . Start  15997839
Chromosome Location . End  16026847 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y105C5B.21a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002175 jac-1 Y105C5B.21 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y105C5B.21a Y105C5B.21a 3765   IV: 15998129-15998405

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y105C5B.21a.1 15997839 16026847 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon162656   567   IV: 15997839-15998405 Caenorhabditis elegans
Exon162665   169   IV: 15998926-15999094 Caenorhabditis elegans
Exon162673   159   IV: 15999150-15999308 Caenorhabditis elegans
Exon162681   1104   IV: 15999764-16000867 Caenorhabditis elegans
Exon162693   180   IV: 16001755-16001934 Caenorhabditis elegans
Exon162705   432   IV: 16002467-16002898 Caenorhabditis elegans
Exon162723   181   IV: 16004382-16004562 Caenorhabditis elegans
Exon162737   338   IV: 16005253-16005590 Caenorhabditis elegans
Exon162747   126   IV: 16005925-16006050 Caenorhabditis elegans
Exon162784   198   IV: 16011898-16012095 Caenorhabditis elegans
Exon162806   229   IV: 16014313-16014541 Caenorhabditis elegans
Exon162828   154   IV: 16017337-16017490 Caenorhabditis elegans
Exon162838   63   IV: 16018899-16018961 Caenorhabditis elegans
Exon162893   155   IV: 16026693-16026847 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y105C5B.21a.1 15997839 16026847 -1

1 Sequence

Length
4055

1 Sequence Ontology Term

Identifier Name Description
transcript