WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y105C5B.21d.1 Sequence Name  Y105C5B.21d.1
Length (nt)  3334   Chromosome Location  IV: 15997855-16006367
Chromosome . Primary Identifier  IV Chromosome Location . Start  15997855
Chromosome Location . End  16006367 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y105C5B.21d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002175 jac-1 Y105C5B.21 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y105C5B.21d Y105C5B.21d 3036   IV: 15998129-15998405

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y105C5B.21d.1 15997855 16006367 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon162658   551   IV: 15997855-15998405 Caenorhabditis elegans
Exon162668   169   IV: 15998926-15999094 Caenorhabditis elegans
Exon162676   159   IV: 15999150-15999308 Caenorhabditis elegans
Exon162684   1104   IV: 15999764-16000867 Caenorhabditis elegans
Exon162696   180   IV: 16001755-16001934 Caenorhabditis elegans
Exon162708   432   IV: 16002467-16002898 Caenorhabditis elegans
Exon162726   181   IV: 16004382-16004562 Caenorhabditis elegans
Exon162740   338   IV: 16005253-16005590 Caenorhabditis elegans
Exon162750   126   IV: 16005925-16006050 Caenorhabditis elegans
Exon162758   94   IV: 16006274-16006367 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y105C5B.21d.1 15997855 16006367 -1

1 Sequence

Length
3334

1 Sequence Ontology Term

Identifier Name Description
transcript