WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y105C5B.21g.1 Sequence Name  Y105C5B.21g.1
Length (nt)  3261   Chromosome Location  IV: 15998129-16014403
Chromosome . Primary Identifier  IV Chromosome Location . Start  15998129
Chromosome Location . End  16014403 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y105C5B.21g.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002175 jac-1 Y105C5B.21 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y105C5B.21g Y105C5B.21g 3261   IV: 15998129-15998405

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y105C5B.21g.1 15998129 16014403 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon162660   277   IV: 15998129-15998405 Caenorhabditis elegans
Exon162671   169   IV: 15998926-15999094 Caenorhabditis elegans
Exon162679   165   IV: 15999150-15999314 Caenorhabditis elegans
Exon162687   1104   IV: 15999764-16000867 Caenorhabditis elegans
Exon162699   180   IV: 16001755-16001934 Caenorhabditis elegans
Exon162711   432   IV: 16002467-16002898 Caenorhabditis elegans
Exon162729   181   IV: 16004382-16004562 Caenorhabditis elegans
Exon162743   338   IV: 16005253-16005590 Caenorhabditis elegans
Exon162753   126   IV: 16005925-16006050 Caenorhabditis elegans
Exon162789   198   IV: 16011898-16012095 Caenorhabditis elegans
Exon162805   91   IV: 16014313-16014403 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y105C5B.21g.1 15998129 16014403 -1

1 Sequence

Length
3261

1 Sequence Ontology Term

Identifier Name Description
transcript