WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y105C5B.21f.1 Sequence Name  Y105C5B.21f.1
Length (nt)  3552   Chromosome Location  IV: 15998129-16017489
Chromosome . Primary Identifier  IV Chromosome Location . Start  15998129
Chromosome Location . End  16017489 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y105C5B.21f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002175 jac-1 Y105C5B.21 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y105C5B.21f Y105C5B.21f 3552   IV: 15998129-15998405

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y105C5B.21f.1 15998129 16017489 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon162662   277   IV: 15998129-15998405 Caenorhabditis elegans
Exon162670   169   IV: 15998926-15999094 Caenorhabditis elegans
Exon162678   165   IV: 15999150-15999314 Caenorhabditis elegans
Exon162686   1104   IV: 15999764-16000867 Caenorhabditis elegans
Exon162698   180   IV: 16001755-16001934 Caenorhabditis elegans
Exon162710   432   IV: 16002467-16002898 Caenorhabditis elegans
Exon162728   181   IV: 16004382-16004562 Caenorhabditis elegans
Exon162742   338   IV: 16005253-16005590 Caenorhabditis elegans
Exon162752   126   IV: 16005925-16006050 Caenorhabditis elegans
Exon162788   198   IV: 16011898-16012095 Caenorhabditis elegans
Exon162809   229   IV: 16014313-16014541 Caenorhabditis elegans
Exon162827   153   IV: 16017337-16017489 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y105C5B.21f.1 15998129 16017489 -1

1 Sequence

Length
3552

1 Sequence Ontology Term

Identifier Name Description
transcript