WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y116A8C.9a.1 Sequence Name  Y116A8C.9a.1
Length (nt)  2498   Chromosome Location  IV: 16939216-16946800
Chromosome . Primary Identifier  IV Chromosome Location . Start  16939216
Chromosome Location . End  16946800 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y116A8C.9a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013789 Y116A8C.9 Y116A8C.9 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y116A8C.9a Y116A8C.9a 1269   IV: 16940445-16940554

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y116A8C.9a.1 16939216 16946800 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon166408   1339   IV: 16939216-16940554 Caenorhabditis elegans
Exon166410   163   IV: 16941045-16941207 Caenorhabditis elegans
Exon166412   210   IV: 16942106-16942315 Caenorhabditis elegans
Exon166415   96   IV: 16943015-16943110 Caenorhabditis elegans
Exon166417   171   IV: 16944084-16944254 Caenorhabditis elegans
Exon166418   198   IV: 16944833-16945030 Caenorhabditis elegans
Exon166419   97   IV: 16946316-16946412 Caenorhabditis elegans
Exon166420   99   IV: 16946474-16946572 Caenorhabditis elegans
Exon166421   78   IV: 16946625-16946702 Caenorhabditis elegans
Exon166422   47   IV: 16946754-16946800 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y116A8C.9a.1 16939216 16946800 -1

1 Sequence

Length
2498

1 Sequence Ontology Term

Identifier Name Description
transcript