WormMine: Gene WBGene00049248

• WormBase Gene ID: WBGene00049248
• Gene Name: 21ur-3110
• Sequence Name: Y116A8C.143
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by several genes including srbc-48; chd-3; and let-418 based on RNA-seq studies.
• Biotype: SO:0001638
• Genetic Position: IV :16.0552±
• Length (nt): 21

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00049248

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:Y116A8C.143	Y116A8C.143	21	IV: 17039821-17039841

Other

0 CDSs

0 RNAi Result

21 Allele

• gk964078
• gk964500
• gk962765
• gk963590
• gk962529
• gk963948
• gk963888
• gk963668
• gk963667
• gk963682
• gk963832
• gk963681
• gk963831
• gk964120
• gk963362
• gk964119
• tm10577
• gk963363
• WBVar02124370
• WBVar02124129
• WBVar02000912

1 Chromosome

• WormBase ID: IV
• Organism: Caenorhabditis elegans
• Length (nt): 17493829

1 Chromosome Location

• Feature . Primary Identifier: WBGene00049248
• Start: 17039821
• End: 17039841
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrIV_17039842..17040451
• Length (nt): 610
• Chromosome Location: IV: 17039842-17040451
• Organism: Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression in set-2(tm1630) animals at embryo stage, comparing to in N2 animals.	DESeq2 (v2.1.8.3) was used to determine DE genes and to generate principal component and scatter plots. DE genes with FDR < 0.05 were analysed using g:Profiler with Bonferroni correction.	WBPaper00060014:set-2(tm1630)_upregulated
	Transcripts that showed significantly decreased expression in srbc-48(ac23);kyIs262;fer-1(b232ts) comparing to in kyIs262;fer-1(b232ts), 24h after infection with P.aeruginosa.	DESeq2, FDR <0.05, fold change > 2.	WBPaper00059664:srbc-48(ac23)_downregulated
	Transcripts that showed significantly increased expression in 24-cell stage embryo of chd-3(eh4)let-418(RNAi) animals, comparing to in N2 animals injected with gfp control RNAi vector.	DESeq and EdgeR were used. A threshold of 1.5 log2 fold change and a p value <10 % were applied. let-418: wild-type; let-418(RNAi)-treated embryos; chd-3: chd-3(eh4);controlGFP(RNAi)-treated embryos; chd-3_let-418: chd-3(eh4); let-418(RNAi)-treated embryos. All fold changes are calculated versus wild-type;control(RNAi)-treated embryos. 1h and 3h correspond to the 24- and 100-cell stages, respectively.	WBPaper00050163:chd-3(eh4);let-418(RNAi)_upregulated_24-cell-embryo

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00049248
• Start: 17039821
• End: 17039841
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 21

1 Sequence Ontology Term