WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  DESeq and EdgeR were used. A threshold of 1.5 log2 fold change and a p value <10 % were applied. let-418: wild-type; let-418(RNAi)-treated embryos; chd-3: chd-3(eh4);controlGFP(RNAi)-treated embryos; chd-3_let-418: chd-3(eh4); let-418(RNAi)-treated embryos. All fold changes are calculated versus wild-type;control(RNAi)-treated embryos. 1h and 3h correspond to the 24- and 100-cell stages, respectively. Description  Transcripts that showed significantly increased expression in 24-cell stage embryo of chd-3(eh4)let-418(RNAi) animals, comparing to in N2 animals injected with gfp control RNAi vector.
Primary Identifier  WBPaper00050163:chd-3(eh4);let-418(RNAi)_upregulated_24-cell-embryo
Paste the following link
Lists
This ExpressionCluster isn't in any lists. Upload a list.

0 Anatomy Terms

916 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000003 aat-2 F07C3.7 Caenorhabditis elegans
WBGene00000019 abt-1 C24F3.5 Caenorhabditis elegans
WBGene00000023 abt-5 Y53C10A.9 Caenorhabditis elegans
WBGene00000031 abu-8 C03A7.14 Caenorhabditis elegans
WBGene00000035 ace-1 W09B12.1 Caenorhabditis elegans
WBGene00000044 acr-5 K03F8.2 Caenorhabditis elegans
WBGene00000056 acr-17 F53E10.2 Caenorhabditis elegans
WBGene00000068 acy-1 F17C8.1 Caenorhabditis elegans
WBGene00000086 aex-3 C02H7.3 Caenorhabditis elegans
WBGene00000096 ahr-1 C41G7.5 Caenorhabditis elegans
WBGene00000103 akt-2 F28H6.1 Caenorhabditis elegans
WBGene00000193 arl-6 C38D4.8 Caenorhabditis elegans
WBGene00000232 avr-14 B0207.12 Caenorhabditis elegans
WBGene00000253 bli-3 F56C11.1 Caenorhabditis elegans
WBGene00000266 bre-1 C53B4.7 Caenorhabditis elegans
WBGene00000279 cah-1 F54D8.4 Caenorhabditis elegans
WBGene00000284 cah-6 T28F2.3 Caenorhabditis elegans
WBGene00000397 cdh-5 F08B4.2 Caenorhabditis elegans
WBGene00000399 cdh-7 R05H10.6 Caenorhabditis elegans
WBGene00000402 cdh-10 C45G7.5 Caenorhabditis elegans
WBGene00000403 casy-1 B0034.3 Caenorhabditis elegans
WBGene00000430 ceh-5 C16C2.1 Caenorhabditis elegans
WBGene00000431 ceh-6 K02B12.1 Caenorhabditis elegans
WBGene00000439 ceh-16 C13G5.1 Caenorhabditis elegans
WBGene00000451 ceh-30 C33D12.7 Caenorhabditis elegans
WBGene00000485 che-3 F18C12.1 Caenorhabditis elegans
WBGene00000488 che-7 F26D11.10 Caenorhabditis elegans
WBGene00000491 che-12 B0024.8 Caenorhabditis elegans
WBGene00000493 che-14 F56H1.1 Caenorhabditis elegans
WBGene00000497 chs-2 F48A11.1 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
Levin M, Hashimshony T, Wagner F, Yanai I. Developmental milestones punctuate gene expression in the Caenorhabditis embryo. Dev Cell. 2012 May 15;22(5):1101-8. Epub 2012 May 3. PubMed PMID: 22560298. Supplementary table 1. Fourth cleavage of the AB lineage. Contains 24 cells. 24-cell embryo Ce WBls:0000085

0 Processes

2 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000482 chd-3 T14G8.1 Caenorhabditis elegans
WBGene00002637 let-418 F26F12.7 Caenorhabditis elegans

0 Regulated By Molecule