WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T28F3.3.2 Sequence Name  T28F3.3.2
Length (nt)  1629   Chromosome Location  IV: 17285733-17288139
Chromosome . Primary Identifier  IV Chromosome Location . Start  17285733
Chromosome Location . End  17288139 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T28F3.3.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00044067 zipt-7.1 T28F3.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T28F3.3 T28F3.3 1182   IV: 17286077-17286243

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T28F3.3.2 17285733 17288139 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

7 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon167588   293   IV: 17285733-17286025 Caenorhabditis elegans
Exon167591   171   IV: 17286073-17286243 Caenorhabditis elegans
Exon167593   124   IV: 17286290-17286413 Caenorhabditis elegans
Exon167596   198   IV: 17286463-17286660 Caenorhabditis elegans
Exon167599   369   IV: 17286715-17287083 Caenorhabditis elegans
Exon167602   326   IV: 17287129-17287454 Caenorhabditis elegans
Exon167604   148   IV: 17287992-17288139 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T28F3.3.2 17285733 17288139 -1

1 Sequence

Length
1629

1 Sequence Ontology Term

Identifier Name Description
transcript