WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T28F3.4a.1 Sequence Name  T28F3.4a.1
Length (nt)  1948   Chromosome Location  IV: 17288200-17291733
Chromosome . Primary Identifier  IV Chromosome Location . Start  17288200
Chromosome Location . End  17291733 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T28F3.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012130 slc-17.4 T28F3.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T28F3.4a T28F3.4a 1722   IV: 17288337-17288569

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T28F3.4a.1 17288200 17291733 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon167605   370   IV: 17288200-17288569 Caenorhabditis elegans
Exon167607   88   IV: 17288617-17288704 Caenorhabditis elegans
Exon167609   154   IV: 17288750-17288903 Caenorhabditis elegans
Exon167611   91   IV: 17288949-17289039 Caenorhabditis elegans
Exon167612   133   IV: 17289353-17289485 Caenorhabditis elegans
Exon167614   153   IV: 17289529-17289681 Caenorhabditis elegans
Exon167616   134   IV: 17289925-17290058 Caenorhabditis elegans
Exon167618   178   IV: 17290160-17290337 Caenorhabditis elegans
Exon167620   234   IV: 17290673-17290906 Caenorhabditis elegans
Exon167622   72   IV: 17290962-17291033 Caenorhabditis elegans
Exon167624   138   IV: 17291081-17291218 Caenorhabditis elegans
Exon167626   50   IV: 17291401-17291450 Caenorhabditis elegans
Exon167628   153   IV: 17291581-17291733 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T28F3.4a.1 17288200 17291733 -1

1 Sequence

Length
1948

1 Sequence Ontology Term

Identifier Name Description
transcript