WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T28F3.5a.1 Sequence Name  T28F3.5a.1
Length (nt)  4843   Chromosome Location  IV: 17294789-17300488
Chromosome . Primary Identifier  IV Chromosome Location . Start  17294789
Chromosome Location . End  17300488 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T28F3.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012131 T28F3.5 T28F3.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T28F3.5a T28F3.5a 4839   IV: 17294793-17294888

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T28F3.5a.1 17294789 17300488 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon167631   100   IV: 17294789-17294888 Caenorhabditis elegans
Exon167633   139   IV: 17294939-17295077 Caenorhabditis elegans
Exon167635   222   IV: 17295128-17295349 Caenorhabditis elegans
Exon167637   287   IV: 17295412-17295698 Caenorhabditis elegans
Exon167639   198   IV: 17295744-17295941 Caenorhabditis elegans
Exon167641   302   IV: 17295990-17296291 Caenorhabditis elegans
Exon167643   316   IV: 17296337-17296652 Caenorhabditis elegans
Exon167645   180   IV: 17296701-17296880 Caenorhabditis elegans
Exon167647   255   IV: 17296931-17297185 Caenorhabditis elegans
Exon167649   98   IV: 17297238-17297335 Caenorhabditis elegans
Exon167651   871   IV: 17297383-17298253 Caenorhabditis elegans
Exon167653   140   IV: 17298298-17298437 Caenorhabditis elegans
Exon167655   355   IV: 17298485-17298839 Caenorhabditis elegans
Exon167657   210   IV: 17298891-17299100 Caenorhabditis elegans
Exon167659   219   IV: 17299146-17299364 Caenorhabditis elegans
Exon167661   262   IV: 17299417-17299678 Caenorhabditis elegans
Exon167663   417   IV: 17299729-17300145 Caenorhabditis elegans
Exon167665   272   IV: 17300217-17300488 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T28F3.5a.1 17294789 17300488 1

1 Sequence

Length
4843

1 Sequence Ontology Term

Identifier Name Description
transcript