WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C49C3.1.1 Sequence Name  C49C3.1.1
Length (nt)  2457   Chromosome Location  IV: 17312142-17315462
Chromosome . Primary Identifier  IV Chromosome Location . Start  17312142
Chromosome Location . End  17315462 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C49C3.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004908 snf-9 C49C3.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C49C3.1 C49C3.1 2142   IV: 17312424-17312594

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C49C3.1.1 17312142 17315462 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon167699   453   IV: 17312142-17312594 Caenorhabditis elegans
Exon167700   88   IV: 17312646-17312733 Caenorhabditis elegans
Exon167701   135   IV: 17312776-17312910 Caenorhabditis elegans
Exon167702   243   IV: 17312957-17313199 Caenorhabditis elegans
Exon167703   103   IV: 17313440-17313542 Caenorhabditis elegans
Exon167704   142   IV: 17313588-17313729 Caenorhabditis elegans
Exon167705   114   IV: 17313773-17313886 Caenorhabditis elegans
Exon167706   120   IV: 17313932-17314051 Caenorhabditis elegans
Exon167707   366   IV: 17314095-17314460 Caenorhabditis elegans
Exon167708   100   IV: 17314506-17314605 Caenorhabditis elegans
Exon167709   131   IV: 17314740-17314870 Caenorhabditis elegans
Exon167710   84   IV: 17314915-17314998 Caenorhabditis elegans
Exon167711   180   IV: 17315043-17315222 Caenorhabditis elegans
Exon167712   198   IV: 17315265-17315462 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C49C3.1.1 17312142 17315462 1

1 Sequence

Length
2457

1 Sequence Ontology Term

Identifier Name Description
transcript