WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T28F3.9.1 Sequence Name  T28F3.9.1
Length (nt)  1627   Chromosome Location  IV: 17308511-17311766
Chromosome . Primary Identifier  IV Chromosome Location . Start  17308511
Chromosome Location . End  17311766 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T28F3.9.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012135 T28F3.9 T28F3.9 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T28F3.9 T28F3.9 1542   IV: 17308525-17308641

1 Chromosome

WormBase ID Organism Length (nt)
IV Caenorhabditis elegans 17493829  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T28F3.9.1 17308511 17311766 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon167741   131   IV: 17308511-17308641 Caenorhabditis elegans
Exon167742   109   IV: 17308688-17308796 Caenorhabditis elegans
Exon167746   146   IV: 17309783-17309928 Caenorhabditis elegans
Exon167747   310   IV: 17309975-17310284 Caenorhabditis elegans
Exon167748   261   IV: 17310360-17310620 Caenorhabditis elegans
Exon167749   143   IV: 17310667-17310809 Caenorhabditis elegans
Exon167750   119   IV: 17310853-17310971 Caenorhabditis elegans
Exon167751   127   IV: 17311014-17311140 Caenorhabditis elegans
Exon167752   120   IV: 17311438-17311557 Caenorhabditis elegans
Exon167753   161   IV: 17311606-17311766 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T28F3.9.1 17308511 17311766 1

1 Sequence

Length
1627

1 Sequence Ontology Term

Identifier Name Description
transcript