WormMine: Gene WBGene00014470

• WormBase Gene ID: WBGene00014470
• Gene Name: MTCE.30
• Sequence Name: MTCE.30
• Organism: Caenorhabditis elegans
• Automated Description: Enriched in anchor cell and sensory neurons based on RNA-seq studies. Is affected by several genes including prg-1; lpd-3; and zip-3 based on RNA-seq and microarray studies.
• Biotype: SO:0001272
• Genetic Position: :±
• Length (nt): 55

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00014470

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:MTCE.30	MTCE.30	55	MtDNA: 9593-9647

Other

0 CDSs

0 RNAi Result

0 Allele

1 Chromosome

• WormBase ID: MtDNA
• Organism: Caenorhabditis elegans
• Length (nt): 13794

1 Chromosome Location

• Feature . Primary Identifier: WBGene00014470
• Start: 9593
• End: 9647
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrMtDNA_9648..9648
• Length (nt): 1
• Chromosome Location: MtDNA: 9648-9648
• Organism: Caenorhabditis elegans

9 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts depleted in purified oocyte P bodies comparing to in whole oocytes.	DESeq2, FDR < 0.05, fold change > 2.	WBPaper00065975:P-body_vs_oocyte_depleted
	Transcripts depleted in purified oocyte P bodies comparing to in the whole animal.	DESeq2, FDR < 0.05, fold change > 2.	WBPaper00065975:P-body_vs_WholeAnimal_depleted
	Transcripts that showed significantly increased expression in daf-2(e1370) comparing to in N2.	Student's t-test, fold change > 2, p-value < 0.05.	WBPaper00055386:daf-2(e1370)_upregulated
	Transcripts that showed significantly increased expression in zip-3(gk3164) comparing to in N2, after exposed to P. aeruginosa for 18 hours.	p < 0.05	WBPaper00056326:zip-3(gk3164)_upregulated_P.aeruginosa-infected
	Transcripts enriched in invading anchor cells comparing to in whole animal.	DESeq2v.1.30.1. fold change >= 2, FDR < 0.05	WBPaper00065258:anchor-cell_enriched
	Transcripts that showed significantly increased expression in sensory neuron (labeled by iaIs25[Pgcy-37::GFP + unc-119(+)]) comparing to in whole worm.	Fold change > 2, p-value < 0.05.	WBPaper00060661:sensory-neuron_enriched
	Transcripts that showed significantly altered expression at RMG neurons in camt-1(ok515) animals comparing to in wild type AX1888-1 strain.	RNA-seq data were mapped using PRAGUI - a Python 3-based pipeline for RNA-seq data analysis.	WBPaper00061902:camt-1(ok515)_regulated_RMG
	Protein coding genes with decreased expression in prg-1(wm161) comparing to in N2.	Cuffdiff and DEGseq were used to calculate the differential expression of protein-coding genes with and without the prg-1 mutation, and authors selected genes which had more than two-fold difference in expression (P < 0.05, q < 0.01 of Storey) from DEGseq outcomes. The intersection of genes which authors selected from DEGseq outcomes and genes which had more than two-fold difference in expression (P < 0.05) from Cuffdiff outcomes was defined as differentially expressed genes.	WBPaper00045316:prg-1_downregulated_L3
	Transcripts that showed significantly decreased expression in lpd-3(ok2138) comparing to in N2 animals.	DESeq2, fold change > 4, FDR < 0.05.	WBPaper00064661:lpd-3(ok2138)_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00014470
• Start: 9593
• End: 9647
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 55

1 Sequence Ontology Term