WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0348.4p.1 Sequence Name  B0348.4p.1
Length (nt)  4212   Chromosome Location  V: 21007-43170
Chromosome . Primary Identifier  V Chromosome Location . Start  21007
Chromosome Location . End  43170 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0348.4p.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001177 egl-8 B0348.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0348.4p B0348.4p 4212   V: 21007-21090

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:B0348.4p.1 21007 43170 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

20 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon168807   84   V: 21007-21090 Caenorhabditis elegans
Exon168830   362   V: 22495-22856 Caenorhabditis elegans
Exon168855   136   V: 23159-23294 Caenorhabditis elegans
Exon168893   104   V: 23793-23896 Caenorhabditis elegans
Exon168918   472   V: 24788-25259 Caenorhabditis elegans
Exon168943   165   V: 25965-26129 Caenorhabditis elegans
Exon168968   187   V: 26194-26380 Caenorhabditis elegans
Exon168984   318   V: 28382-28699 Caenorhabditis elegans
Exon168996   180   V: 29336-29515 Caenorhabditis elegans
Exon169017   98   V: 30200-30297 Caenorhabditis elegans
Exon169055   142   V: 35015-35156 Caenorhabditis elegans
Exon169079   738   V: 36118-36855 Caenorhabditis elegans
Exon169103   296   V: 36918-37213 Caenorhabditis elegans
Exon169127   132   V: 38138-38269 Caenorhabditis elegans
Exon169144   36   V: 38991-39026 Caenorhabditis elegans
Exon169164   270   V: 40454-40723 Caenorhabditis elegans
Exon169188   116   V: 41729-41844 Caenorhabditis elegans
Exon169212   127   V: 42040-42166 Caenorhabditis elegans
Exon169236   104   V: 42214-42317 Caenorhabditis elegans
Exon169247   145   V: 43026-43170 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:B0348.4p.1 21007 43170 1

1 Sequence

Length
4212

1 Sequence Ontology Term

Identifier Name Description
transcript