WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C39F7.2a.1 Sequence Name  C39F7.2a.1
Length (nt)  2453   Chromosome Location  V: 1223902-1235445
Chromosome . Primary Identifier  V Chromosome Location . Start  1223902
Chromosome Location . End  1235445 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C39F7.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016539 madd-2 C39F7.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C39F7.2a C39F7.2a 2298   V: 1224046-1224139

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C39F7.2a.1 1223902 1235445 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon171815   238   V: 1223902-1224139 Caenorhabditis elegans
Exon171818   100   V: 1224937-1225036 Caenorhabditis elegans
Exon171820   202   V: 1225084-1225285 Caenorhabditis elegans
Exon171822   264   V: 1225642-1225905 Caenorhabditis elegans
Exon171824   146   V: 1225962-1226107 Caenorhabditis elegans
Exon171826   42   V: 1226842-1226883 Caenorhabditis elegans
Exon171827   157   V: 1226958-1227114 Caenorhabditis elegans
Exon171829   330   V: 1227352-1227681 Caenorhabditis elegans
Exon171832   60   V: 1233212-1233271 Caenorhabditis elegans
Exon171834   127   V: 1233320-1233446 Caenorhabditis elegans
Exon171836   436   V: 1233762-1234197 Caenorhabditis elegans
Exon171838   108   V: 1234910-1235017 Caenorhabditis elegans
Exon171840   243   V: 1235203-1235445 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C39F7.2a.1 1223902 1235445 -1

1 Sequence

Length
2453

1 Sequence Ontology Term

Identifier Name Description
transcript