WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y32G9A.6a.1 Sequence Name  Y32G9A.6a.1
Length (nt)  2689   Chromosome Location  V: 1895784-1906797
Chromosome . Primary Identifier  V Chromosome Location . Start  1895784
Chromosome Location . End  1906797 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y32G9A.6a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021304 nphp-2 Y32G9A.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y32G9A.6a Y32G9A.6a 2439   V: 1895797-1895874

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y32G9A.6a.1 1895784 1906797 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon173141   91   V: 1895784-1895874 Caenorhabditis elegans
Exon173142   131   V: 1896959-1897089 Caenorhabditis elegans
Exon173144   136   V: 1897135-1897270 Caenorhabditis elegans
Exon173146   60   V: 1897317-1897376 Caenorhabditis elegans
Exon173148   726   V: 1898421-1899146 Caenorhabditis elegans
Exon173151   279   V: 1902311-1902589 Caenorhabditis elegans
Exon173155   204   V: 1903043-1903246 Caenorhabditis elegans
Exon173161   192   V: 1903296-1903487 Caenorhabditis elegans
Exon173165   154   V: 1904182-1904335 Caenorhabditis elegans
Exon173173   92   V: 1904382-1904473 Caenorhabditis elegans
Exon173181   115   V: 1905672-1905786 Caenorhabditis elegans
Exon173189   108   V: 1905833-1905940 Caenorhabditis elegans
Exon173197   142   V: 1906338-1906479 Caenorhabditis elegans
Exon173212   259   V: 1906539-1906797 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y32G9A.6a.1 1895784 1906797 1

1 Sequence

Length
2689

1 Sequence Ontology Term

Identifier Name Description
transcript