WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F54E2.3e.1 Sequence Name  F54E2.3e.1
Length (nt)  15309   Chromosome Location  V: 2781939-2807860
Chromosome . Primary Identifier  V Chromosome Location . Start  2781939
Chromosome Location . End  2807860 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54E2.3e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004130 ketn-1 F54E2.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54E2.3e F54E2.3e 14670   V: 2782578-2782585

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F54E2.3e.1 2781939 2807860 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

27 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon175332   647   V: 2781939-2782585 Caenorhabditis elegans
Exon175345   127   V: 2782844-2782970 Caenorhabditis elegans
Exon175355   230   V: 2783023-2783252 Caenorhabditis elegans
Exon175366   748   V: 2783366-2784113 Caenorhabditis elegans
Exon175377   183   V: 2784160-2784342 Caenorhabditis elegans
Exon175395   123   V: 2784836-2784958 Caenorhabditis elegans
Exon175403   7569   V: 2785054-2792622 Caenorhabditis elegans
Exon175414   204   V: 2792670-2792873 Caenorhabditis elegans
Exon175425   195   V: 2792920-2793114 Caenorhabditis elegans
Exon175436   105   V: 2793907-2794011 Caenorhabditis elegans
Exon175447   110   V: 2794054-2794163 Caenorhabditis elegans
Exon175459   247   V: 2795251-2795497 Caenorhabditis elegans
Exon175469   158   V: 2795546-2795703 Caenorhabditis elegans
Exon175480   343   V: 2795751-2796093 Caenorhabditis elegans
Exon175492   992   V: 2797018-2798009 Caenorhabditis elegans
Exon175501   773   V: 2798058-2798830 Caenorhabditis elegans
Exon175510   160   V: 2798883-2799042 Caenorhabditis elegans
Exon175519   439   V: 2799099-2799537 Caenorhabditis elegans
Exon175530   171   V: 2800182-2800352 Caenorhabditis elegans
Exon175534   348   V: 2800401-2800748 Caenorhabditis elegans
Exon175538   198   V: 2800794-2800991 Caenorhabditis elegans
Exon175543   87   V: 2802328-2802414 Caenorhabditis elegans
Exon175547   153   V: 2806037-2806189 Caenorhabditis elegans
Exon175551   634   V: 2806238-2806871 Caenorhabditis elegans
Exon175555   170   V: 2806983-2807152 Caenorhabditis elegans
Exon175559   129   V: 2807264-2807392 Caenorhabditis elegans
Exon175563   66   V: 2807795-2807860 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F54E2.3e.1 2781939 2807860 -1

1 Sequence

Length
15309

1 Sequence Ontology Term

Identifier Name Description
transcript