WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F54E2.3f.1 Sequence Name  F54E2.3f.1
Length (nt)  14547   Chromosome Location  V: 2782578-2807860
Chromosome . Primary Identifier  V Chromosome Location . Start  2782578
Chromosome Location . End  2807860 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54E2.3f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004130 ketn-1 F54E2.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54E2.3f F54E2.3f 14547   V: 2782578-2782585

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:F54E2.3f.1 2782578 2807860 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

26 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon175340   8   V: 2782578-2782585 Caenorhabditis elegans
Exon175346   127   V: 2782844-2782970 Caenorhabditis elegans
Exon175356   230   V: 2783023-2783252 Caenorhabditis elegans
Exon175367   748   V: 2783366-2784113 Caenorhabditis elegans
Exon175378   183   V: 2784160-2784342 Caenorhabditis elegans
Exon175404   7569   V: 2785054-2792622 Caenorhabditis elegans
Exon175415   204   V: 2792670-2792873 Caenorhabditis elegans
Exon175426   195   V: 2792920-2793114 Caenorhabditis elegans
Exon175437   105   V: 2793907-2794011 Caenorhabditis elegans
Exon175448   110   V: 2794054-2794163 Caenorhabditis elegans
Exon175460   247   V: 2795251-2795497 Caenorhabditis elegans
Exon175470   158   V: 2795546-2795703 Caenorhabditis elegans
Exon175481   343   V: 2795751-2796093 Caenorhabditis elegans
Exon175493   992   V: 2797018-2798009 Caenorhabditis elegans
Exon175502   773   V: 2798058-2798830 Caenorhabditis elegans
Exon175511   160   V: 2798883-2799042 Caenorhabditis elegans
Exon175520   439   V: 2799099-2799537 Caenorhabditis elegans
Exon175531   171   V: 2800182-2800352 Caenorhabditis elegans
Exon175535   348   V: 2800401-2800748 Caenorhabditis elegans
Exon175539   198   V: 2800794-2800991 Caenorhabditis elegans
Exon175544   87   V: 2802328-2802414 Caenorhabditis elegans
Exon175548   153   V: 2806037-2806189 Caenorhabditis elegans
Exon175552   634   V: 2806238-2806871 Caenorhabditis elegans
Exon175556   170   V: 2806983-2807152 Caenorhabditis elegans
Exon175560   129   V: 2807264-2807392 Caenorhabditis elegans
Exon175564   66   V: 2807795-2807860 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:F54E2.3f.1 2782578 2807860 -1

1 Sequence

Length
14547

1 Sequence Ontology Term

Identifier Name Description
transcript