WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00219256 Gene Name  mir-4922.1
Sequence Name  ? C04E12.13 Organism  Caenorhabditis elegans
Automated Description  Is affected by hrpk-1 based on RNA-seq studies. Biotype  SO:0001265
Genetic Position  V :-11.9407 ±0.012627 Length (nt)  ? 65
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00219256

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C04E12.13b C04E12.13b 22   V: 3380145-3380166
 

Other

0 CDSs

1 RNAi Result

WormBase ID
WBRNAi00010105

25 Allele

Public Name
gk963301
gk963591
gk963553
gk964259
gk964351
gk963850
gk963027
gk962689
gk962688
WBVar02121254
WBVar02121469
WBVar02079233
WBVar02124043
WBVar00091234
WBVar02078588
WBVar02076474
WBVar02124496
WBVar02076087
WBVar00091114
WBVar02077105
WBVar02120858
WBVar02077102
WBVar02122848
WBVar02122019
WBVar02076088

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00219256 3380145 3380209 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
Fungi infection: Fusarium oxysporum Transcripts that showed significantly altered expression after infected by fungi Fusarium oxysporum from 0 t0 48 hours. The Benjamini and Hochberg approach was used to adjust the resulting P-values for controlling the false-discovery rate. The transcripts having a false-discovery rate of < 0.05 were considered as differentially expressed. WBPaper00053368:F.oxysporum_regulated
  Micro RNAs that showed significantly increased expression in hrpk-1(tm5522) comparing to in N2 at L4 larva stage. DESeq, fold change > 2, p-value <= 0.05. WBPaper00058673:hrpk-1(tm5522)_upregulated_miRNA_L4

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00219256 3380145 3380209 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
65

1 Sequence Ontology Term