WormMine: Gene WBGene00044119

• WormBase Gene ID: WBGene00044119
• Gene Name: srh-191
• Sequence Name: C07G3.11
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by xpf-1 and qui-1 based on RNA-seq studies. Is affected by rifampin based on RNA-seq studies.
• Biotype: SO:0000336
• Genetic Position: V :-10.3558 ±0.020902
• Length (nt): 878

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00044119

Genomics

0 Transcripts

Other

0 CDSs

0 RNAi Result

30 Allele

• gk963301
• gk963591
• gk963553
• gk964259
• gk964351
• gk963850
• gk963027
• gk962689
• gk962688
• WBVar02124044
• WBVar02123282
• WBVar02121470
• WBVar00206474
• WBVar00206473
• WBVar00206472
• WBVar00206471
• gk322380
• WBVar00206475
• gk230931
• gk230932
• WBVar01848348
• gk963531
• WBVar01615938
• gk913020
• gk384078
• gk726915
• gk899557
• gk508104
• gk562536
• ttTi10928

1 Chromosome

• WormBase ID: V
• Organism: Caenorhabditis elegans
• Length (nt): 20924180

1 Chromosome Location

• Feature . Primary Identifier: WBGene00044119
• Start: 3522496
• End: 3523373
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrV_3519802..3522495
• Length (nt): 2694
• Chromosome Location: V: 3519802-3522495
• Organism: Caenorhabditis elegans

5 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression after animals were treated with 50uM Rifampicin from day 1 to day 3 adult hermaphradite.	DESeq2(v1.14.1), fold change > 2, p-value < 0.05	WBPaper00055354:Rifampicin_upregulated
	Transcripts that showed significantly decreased expression in whole animal day 1 N2 adults comparing to in whole animal day 8 N2 adults.	DESeq2, FDR < 0.05, fold change > 2.	WBPaper00066978:Day1Adult_vs_Day8Adult_downregulated_neuron
	Transcripts that showed significantly increased expression in xpf-1(tm2842) comparing to in N2 animals.	DESeq2 1.14.1, fold change > 2, FDR < 0.01.	WBPaper00062497:xpf-1(tm2842)_upregulated
Bacteria Diet: L. plantarum with pdxH mutant vs. L. plantarum	Transcripts that showed significantly decreased expression in N2 animals fed with L. plantarum with pdxH mutant, comparing to in N2 animals fed with L. plantarum.	GFold3, logFC < -1 or > 1.	WBPaper00066703:L.plantarum-pdxH_downregulated
	Transcripts that showed significantly decreased expression in ADL neurons of qui-1(db104) comparing to in N2 at day 1 adult stage.	tximport 1.14.2 and DEseq2 1.26.0. Fold change > 2, FDR < 0.05.	WBPaper00062520:qui-1(db104)_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00044119
• Start: 3522496
• End: 3523373
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 878

1 Sequence Ontology Term