WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T27C4.2a.1 Sequence Name  T27C4.2a.1
Length (nt)  2969   Chromosome Location  V: 3727253-3739402
Chromosome . Primary Identifier  V Chromosome Location . Start  3727253
Chromosome Location . End  3739402 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T27C4.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020855 hpo-36 T27C4.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T27C4.2a T27C4.2a 2730   V: 3727482-3727592

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T27C4.2a.1 3727253 3739402 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon177669   340   V: 3727253-3727592 Caenorhabditis elegans
Exon177671   285   V: 3727948-3728232 Caenorhabditis elegans
Exon177673   120   V: 3728644-3728763 Caenorhabditis elegans
Exon177675   298   V: 3728814-3729111 Caenorhabditis elegans
Exon177677   110   V: 3729163-3729272 Caenorhabditis elegans
Exon177679   363   V: 3729317-3729679 Caenorhabditis elegans
Exon177681   203   V: 3730287-3730489 Caenorhabditis elegans
Exon177683   91   V: 3730542-3730632 Caenorhabditis elegans
Exon177685   242   V: 3730681-3730922 Caenorhabditis elegans
Exon177689   361   V: 3733151-3733511 Caenorhabditis elegans
Exon177691   171   V: 3733756-3733926 Caenorhabditis elegans
Exon177694   149   V: 3734109-3734257 Caenorhabditis elegans
Exon177697   79   V: 3738228-3738306 Caenorhabditis elegans
Exon177698   157   V: 3739246-3739402 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T27C4.2a.1 3727253 3739402 -1

1 Sequence

Length
2969

1 Sequence Ontology Term

Identifier Name Description
transcript