WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:T27C4.2a Sequence Name  T27C4.2a
Length (nt)  2730   Chromosome Location  V: 3727482-3727592
Chromosome . Primary Identifier  V Chromosome Location . Start  3727482
Chromosome Location . End  3727592
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T27C4.2a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE51251 HPO-36, isoform a 101.9 909 Caenorhabditis elegans
 

Other

11 RNAi

WormBase ID
WBRNAi00054291
WBRNAi00056294
WBRNAi00056295
WBRNAi00019315
WBRNAi00020431
WBRNAi00020432
WBRNAi00020433
WBRNAi00036961
WBRNAi00062432
WBRNAi00088779
WBRNAi00088672

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:T27C4.2a 3727482 3727592 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020855 hpo-36 T27C4.2 Caenorhabditis elegans

14 Locations


Feature . Primary Identifier
Start End Strand
CDS:T27C4.2a 3727482 3727592 -1
CDS:T27C4.2a 3727948 3728232 -1
CDS:T27C4.2a 3728644 3728763 -1
CDS:T27C4.2a 3728814 3729111 -1
CDS:T27C4.2a 3729163 3729272 -1
CDS:T27C4.2a 3729317 3729679 -1
CDS:T27C4.2a 3730287 3730489 -1
CDS:T27C4.2a 3730542 3730632 -1
CDS:T27C4.2a 3730681 3730922 -1
CDS:T27C4.2a 3733151 3733511 -1
CDS:T27C4.2a 3733756 3733926 -1
CDS:T27C4.2a 3734109 3734257 -1
CDS:T27C4.2a 3738228 3738306 -1
CDS:T27C4.2a 3739246 3739392 -1

1 Sequence

Length
2730

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:T27C4.2a.1 T27C4.2a.1 2969   V: 3727253-3739402