WormMine: Gene WBGene00219739

• WormBase Gene ID: WBGene00219739
• Gene Name: linc-136
• Sequence Name: T27C4.6
• Organism: Caenorhabditis elegans
• Automated Description: Enriched in neurons based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including dpy-21; ilc-17.1; and ogt-1 based on RNA-seq studies.
• Biotype: SO:0001641
• Genetic Position: V :-8.16832±
• Length (nt): 6035

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00219739

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:T27C4.6	T27C4.6	894	V: 3717700-3723734

Other

0 CDSs

0 RNAi Result

55 Allele

• gk963301
• gk963591
• gk963553
• gk964259
• gk964351
• gk963850
• gk963027
• gk962826
• gk962867
• tm10805
• WBVar01972520
• WBVar01972521
• WBVar01972522
• WBVar01972523
• gk405173
• gk864591
• gk927139
• gk608780
• gk473781
• gk658064
• gk377779
• gk461082
• gk801577
• gk578492
• gk881519
• gk362829
• gk402622
• gk771123
• gk488254
• gk698238

1 Chromosome

• WormBase ID: V
• Organism: Caenorhabditis elegans
• Length (nt): 20924180

1 Chromosome Location

• Feature . Primary Identifier: WBGene00219739
• Start: 3717700
• End: 3723734
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrV_3715970..3717699
• Length (nt): 1730
• Chromosome Location: V: 3715970-3717699
• Organism: Caenorhabditis elegans

10 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
	Transcripts that showed significantly increased expression in L1 neural cells comparing to in adult neural cells.	DESeq2 (v1.18.1) fold change > 2, P-adj<0.05, using BenjaminiHochberg correction.	WBPaper00060811:L1_vs_adult_upregulated_neural
	Neuronally enriched transcripts according to a comparison of neuronal nuclei IP samples to total nuclei using isolation of nuclei from tagged specific cell types (INTACT) technology.	DESEQ2, fold change > 2 and FDR < 0.01.	WBPaper00062103:neuron_enriched
	Transcripts that showed significantly increased expression in ilc-17.1(syb5296) comparing to in N2 animals at L4 larva stage.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066594:ilc-17.1(syb5296)_upregulated
	Transcripts that showed significantly increased expression in sensory neuron (labeled by iaIs25[Pgcy-37::GFP + unc-119(+)]) comparing to in whole worm.	Fold change > 2, p-value < 0.05.	WBPaper00060661:sensory-neuron_enriched
	Transcripts that showed significantly decreased expression in dpy-21(e428) comparing to in N2 during L3 stage.	DESeq v1.6.3. Fold change > 1.5.	WBPaper00050370:dpy-21(e428)_L3_downregulated
	ncRNAs with significantly increased expression in cep-1(gk138) than in N2 under normal conditions, according to RNAseq.	ncRNAs with more than 2 fold difference in expression are considered differentially expressed	WBPaper00045380:cep-1(gk138)_upregulated_normal
	Single-cell RNA-Seq cell group 6_1 expressed in neuron.	scVI 0.6.0	WBPaper00065841:6_1
	Single-cell RNA-Seq cell group 20_1 expressed in neuron.	scVI 0.6.0	WBPaper00065841:20_1
	Single-cell RNA-Seq cell group 14_0 expressed in neuron.	scVI 0.6.0	WBPaper00065841:14_0

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00219739
• Start: 3717700
• End: 3723734
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 6035

1 Sequence Ontology Term