WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T28F12.3a.1 Sequence Name  T28F12.3a.1
Length (nt)  5232   Chromosome Location  V: 4516944-4549291
Chromosome . Primary Identifier  V Chromosome Location . Start  4516944
Chromosome Location . End  4549291 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T28F12.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004947 sos-1 T28F12.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T28F12.3a T28F12.3a 4482   V: 4517682-4517811

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:T28F12.3a.1 4516944 4549291 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon179360   868   V: 4516944-4517811 Caenorhabditis elegans
Exon179362   114   V: 4518431-4518544 Caenorhabditis elegans
Exon179364   175   V: 4518599-4518773 Caenorhabditis elegans
Exon179366   264   V: 4519908-4520171 Caenorhabditis elegans
Exon179369   280   V: 4521760-4522039 Caenorhabditis elegans
Exon179371   123   V: 4522469-4522591 Caenorhabditis elegans
Exon179374   135   V: 4536192-4536326 Caenorhabditis elegans
Exon179376   420   V: 4537162-4537581 Caenorhabditis elegans
Exon179378   129   V: 4539158-4539286 Caenorhabditis elegans
Exon179380   81   V: 4539335-4539415 Caenorhabditis elegans
Exon179382   1054   V: 4540666-4541719 Caenorhabditis elegans
Exon179384   79   V: 4542422-4542500 Caenorhabditis elegans
Exon179386   250   V: 4542555-4542804 Caenorhabditis elegans
Exon179388   399   V: 4543528-4543926 Caenorhabditis elegans
Exon179390   252   V: 4545865-4546116 Caenorhabditis elegans
Exon179392   303   V: 4547570-4547872 Caenorhabditis elegans
Exon179394   87   V: 4548824-4548910 Caenorhabditis elegans
Exon179396   87   V: 4549021-4549107 Caenorhabditis elegans
Exon179399   132   V: 4549160-4549291 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:T28F12.3a.1 4516944 4549291 -1

1 Sequence

Length
5232

1 Sequence Ontology Term

Identifier Name Description
transcript