WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:T28F12.3a Sequence Name  T28F12.3a
Length (nt)  4482   Chromosome Location  V: 4517682-4517811
Chromosome . Primary Identifier  V Chromosome Location . Start  4517682
Chromosome Location . End  4517811
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T28F12.3a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE36328 SOS-1, isoform a 169.9 1493 Caenorhabditis elegans
 

Other

26 RNAi

WormBase ID
WBRNAi00067680
WBRNAi00067936
WBRNAi00067988
WBRNAi00068050
WBRNAi00061107
WBRNAi00054424
WBRNAi00064778
WBRNAi00019406
WBRNAi00021201
WBRNAi00022495
WBRNAi00071725
WBRNAi00036091
WBRNAi00065550
WBRNAi00071615
WBRNAi00111697
WBRNAi00065553
WBRNAi00060504
WBRNAi00060503
WBRNAi00060505
WBRNAi00060506
WBRNAi00065551
WBRNAi00101898
WBRNAi00101903
WBRNAi00065552
WBRNAi00065554
WBRNAi00065555

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:T28F12.3a 4517682 4517811 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004947 sos-1 T28F12.3 Caenorhabditis elegans

19 Locations


Feature . Primary Identifier
Start End Strand
CDS:T28F12.3a 4517682 4517811 -1
CDS:T28F12.3a 4518431 4518544 -1
CDS:T28F12.3a 4518599 4518773 -1
CDS:T28F12.3a 4519908 4520171 -1
CDS:T28F12.3a 4521760 4522039 -1
CDS:T28F12.3a 4522469 4522591 -1
CDS:T28F12.3a 4536192 4536326 -1
CDS:T28F12.3a 4537162 4537581 -1
CDS:T28F12.3a 4539158 4539286 -1
CDS:T28F12.3a 4539335 4539415 -1
CDS:T28F12.3a 4540666 4541719 -1
CDS:T28F12.3a 4542422 4542500 -1
CDS:T28F12.3a 4542555 4542804 -1
CDS:T28F12.3a 4543528 4543926 -1
CDS:T28F12.3a 4545865 4546116 -1
CDS:T28F12.3a 4547570 4547872 -1
CDS:T28F12.3a 4548824 4548910 -1
CDS:T28F12.3a 4549021 4549107 -1
CDS:T28F12.3a 4549160 4549279 -1

1 Sequence

Length
4482

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:T28F12.3a.1 T28F12.3a.1 5232   V: 4516944-4549291