WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C10G8.5d.1 Sequence Name  C10G8.5d.1
Length (nt)  2853   Chromosome Location  V: 5303693-5309669
Chromosome . Primary Identifier  V Chromosome Location . Start  5303693
Chromosome Location . End  5309669 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C10G8.5d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003567 ncx-2 C10G8.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C10G8.5d C10G8.5d 2853   V: 5303693-5303823

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C10G8.5d.1 5303693 5309669 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon180741   131   V: 5303693-5303823 Caenorhabditis elegans
Exon180744   277   V: 5304705-5304981 Caenorhabditis elegans
Exon180747   405   V: 5305464-5305868 Caenorhabditis elegans
Exon180750   134   V: 5305916-5306049 Caenorhabditis elegans
Exon180753   112   V: 5306099-5306210 Caenorhabditis elegans
Exon180756   104   V: 5306528-5306631 Caenorhabditis elegans
Exon180759   432   V: 5306715-5307146 Caenorhabditis elegans
Exon180763   81   V: 5307661-5307741 Caenorhabditis elegans
Exon180767   101   V: 5307786-5307886 Caenorhabditis elegans
Exon180771   96   V: 5308079-5308174 Caenorhabditis elegans
Exon180774   159   V: 5308477-5308635 Caenorhabditis elegans
Exon180778   122   V: 5308802-5308923 Caenorhabditis elegans
Exon180782   699   V: 5308971-5309669 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C10G8.5d.1 5303693 5309669 1

1 Sequence

Length
2853

1 Sequence Ontology Term

Identifier Name Description
transcript