WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T09D3.4a.1 Sequence Name  T09D3.4a.1
Length (nt)  1482   Chromosome Location  V: 5354053-5358872
Chromosome . Primary Identifier  V Chromosome Location . Start  5354053
Chromosome Location . End  5358872 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T09D3.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020385 nhr-216 T09D3.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T09D3.4a T09D3.4a 1473   V: 5354062-5354157

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T09D3.4a.1 5354053 5358872 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon180866   105   V: 5354053-5354157 Caenorhabditis elegans
Exon180868   152   V: 5354206-5354357 Caenorhabditis elegans
Exon180870   119   V: 5354410-5354528 Caenorhabditis elegans
Exon180872   101   V: 5354776-5354876 Caenorhabditis elegans
Exon180874   96   V: 5354945-5355040 Caenorhabditis elegans
Exon180876   120   V: 5355085-5355204 Caenorhabditis elegans
Exon180878   108   V: 5356044-5356151 Caenorhabditis elegans
Exon180881   290   V: 5356195-5356484 Caenorhabditis elegans
Exon180883   59   V: 5356542-5356600 Caenorhabditis elegans
Exon180885   75   V: 5356694-5356768 Caenorhabditis elegans
Exon180887   101   V: 5357956-5358056 Caenorhabditis elegans
Exon180889   120   V: 5358106-5358225 Caenorhabditis elegans
Exon180891   36   V: 5358837-5358872 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T09D3.4a.1 5354053 5358872 -1

1 Sequence

Length
1482

1 Sequence Ontology Term

Identifier Name Description
transcript