WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:T09D3.4a Sequence Name  T09D3.4a
Length (nt)  1473   Chromosome Location  V: 5354062-5354157
Chromosome . Primary Identifier  V Chromosome Location . Start  5354062
Chromosome Location . End  5354157
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T09D3.4a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE18230 NHR-216, isoform a 56.0 490 Caenorhabditis elegans
 

Other

3 RNAi

WormBase ID
WBRNAi00052946
WBRNAi00018498
WBRNAi00035389

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:T09D3.4a 5354062 5354157 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020385 nhr-216 T09D3.4 Caenorhabditis elegans

13 Locations


Feature . Primary Identifier
Start End Strand
CDS:T09D3.4a 5354062 5354157 -1
CDS:T09D3.4a 5354206 5354357 -1
CDS:T09D3.4a 5354410 5354528 -1
CDS:T09D3.4a 5354776 5354876 -1
CDS:T09D3.4a 5354945 5355040 -1
CDS:T09D3.4a 5355085 5355204 -1
CDS:T09D3.4a 5356044 5356151 -1
CDS:T09D3.4a 5356195 5356484 -1
CDS:T09D3.4a 5356542 5356600 -1
CDS:T09D3.4a 5356694 5356768 -1
CDS:T09D3.4a 5357956 5358056 -1
CDS:T09D3.4a 5358106 5358225 -1
CDS:T09D3.4a 5358837 5358872 -1

1 Sequence

Length
1473

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:T09D3.4a.1 T09D3.4a.1 1482   V: 5354053-5358872