WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T09D3.3.1 Sequence Name  T09D3.3.1
Length (nt)  1977   Chromosome Location  V: 5346494-5349571
Chromosome . Primary Identifier  V Chromosome Location . Start  5346494
Chromosome Location . End  5349571 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T09D3.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020384 T09D3.3 T09D3.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T09D3.3 T09D3.3 1977   V: 5346494-5346580

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T09D3.3.1 5346494 5349571 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon180909   87   V: 5346494-5346580 Caenorhabditis elegans
Exon180910   554   V: 5346625-5347178 Caenorhabditis elegans
Exon180911   94   V: 5347224-5347317 Caenorhabditis elegans
Exon180912   54   V: 5347363-5347416 Caenorhabditis elegans
Exon180913   127   V: 5347467-5347593 Caenorhabditis elegans
Exon180914   172   V: 5347958-5348129 Caenorhabditis elegans
Exon180915   103   V: 5348173-5348275 Caenorhabditis elegans
Exon180916   572   V: 5348321-5348892 Caenorhabditis elegans
Exon180917   133   V: 5349314-5349446 Caenorhabditis elegans
Exon180918   81   V: 5349491-5349571 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T09D3.3.1 5346494 5349571 -1

1 Sequence

Length
1977

1 Sequence Ontology Term

Identifier Name Description
transcript