WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F08F3.2a.1 Sequence Name  F08F3.2a.1
Length (nt)  2300   Chromosome Location  V: 5433392-5437067
Chromosome . Primary Identifier  V Chromosome Location . Start  5433392
Chromosome Location . End  5437067 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F08F3.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00017261 acl-6 F08F3.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F08F3.2a F08F3.2a 2157   V: 5433417-5433542

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F08F3.2a.1 5433392 5437067 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon181027   151   V: 5433392-5433542 Caenorhabditis elegans
Exon181028   68   V: 5433586-5433653 Caenorhabditis elegans
Exon181030   274   V: 5433706-5433979 Caenorhabditis elegans
Exon181032   367   V: 5434025-5434391 Caenorhabditis elegans
Exon181034   95   V: 5434448-5434542 Caenorhabditis elegans
Exon181036   108   V: 5434584-5434691 Caenorhabditis elegans
Exon181038   178   V: 5434735-5434912 Caenorhabditis elegans
Exon181040   330   V: 5435447-5435776 Caenorhabditis elegans
Exon181042   110   V: 5435979-5436088 Caenorhabditis elegans
Exon181044   144   V: 5436351-5436494 Caenorhabditis elegans
Exon181046   199   V: 5436548-5436746 Caenorhabditis elegans
Exon181048   276   V: 5436792-5437067 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F08F3.2a.1 5433392 5437067 1

1 Sequence

Length
2300

1 Sequence Ontology Term

Identifier Name Description
transcript