WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F25B4.5.1 Sequence Name  F25B4.5.1
Length (nt)  2409   Chromosome Location  V: 5678598-5682630
Chromosome . Primary Identifier  V Chromosome Location . Start  5678598
Chromosome Location . End  5682630 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F25B4.5.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00017768 prp-39 F25B4.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F25B4.5 F25B4.5 2133   V: 5678874-5678956

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F25B4.5.1 5678598 5682630 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon181790   359   V: 5678598-5678956 Caenorhabditis elegans
Exon181791   80   V: 5679005-5679084 Caenorhabditis elegans
Exon181792   96   V: 5679134-5679229 Caenorhabditis elegans
Exon181793   475   V: 5679282-5679756 Caenorhabditis elegans
Exon181794   529   V: 5680026-5680554 Caenorhabditis elegans
Exon181795   301   V: 5680614-5680914 Caenorhabditis elegans
Exon181796   233   V: 5681195-5681427 Caenorhabditis elegans
Exon181797   196   V: 5681480-5681675 Caenorhabditis elegans
Exon181798   78   V: 5682208-5682285 Caenorhabditis elegans
Exon181799   62   V: 5682569-5682630 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F25B4.5.1 5678598 5682630 -1

1 Sequence

Length
2409

1 Sequence Ontology Term

Identifier Name Description
transcript