WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C10F3.4a.2 Sequence Name  C10F3.4a.2
Length (nt)  1590   Chromosome Location  V: 5961807-5969175
Chromosome . Primary Identifier  V Chromosome Location . Start  5961807
Chromosome Location . End  5969175 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C10F3.4a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015678 mcp-1 C10F3.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C10F3.4a C10F3.4a 1377   V: 5964963-5965031

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C10F3.4a.2 5961807 5969175 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon182465   117   V: 5961807-5961923 Caenorhabditis elegans
Exon182477   91   V: 5964941-5965031 Caenorhabditis elegans
Exon182481   147   V: 5966493-5966639 Caenorhabditis elegans
Exon182484   114   V: 5967313-5967426 Caenorhabditis elegans
Exon182487   108   V: 5967595-5967702 Caenorhabditis elegans
Exon182490   300   V: 5967755-5968054 Caenorhabditis elegans
Exon182493   116   V: 5968102-5968217 Caenorhabditis elegans
Exon182496   81   V: 5968303-5968383 Caenorhabditis elegans
Exon182499   155   V: 5968427-5968581 Caenorhabditis elegans
Exon182502   89   V: 5968705-5968793 Caenorhabditis elegans
Exon182505   78   V: 5968847-5968924 Caenorhabditis elegans
Exon182509   194   V: 5968982-5969175 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C10F3.4a.2 5961807 5969175 1

1 Sequence

Length
1590

1 Sequence Ontology Term

Identifier Name Description
transcript