WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:VC5.3b.3 Sequence Name  VC5.3b.3
Length (nt)  4348   Chromosome Location  V: 7076349-7081522
Chromosome . Primary Identifier  V Chromosome Location . Start  7076349
Chromosome Location . End  7081522 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
VC5.3b.3

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003786 npa-1 VC5.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:VC5.3b VC5.3b 1200   V: 7079860-7080966

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:VC5.3b.3 7076349 7081522 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon186683   37   V: 7076349-7076385 Caenorhabditis elegans
Exon186692   694   V: 7076495-7077188 Caenorhabditis elegans
Exon186698   372   V: 7077232-7077603 Caenorhabditis elegans
Exon186706   372   V: 7077659-7078030 Caenorhabditis elegans
Exon186713   372   V: 7078076-7078447 Caenorhabditis elegans
Exon186720   372   V: 7078490-7078861 Caenorhabditis elegans
Exon186727   375   V: 7078907-7079281 Caenorhabditis elegans
Exon186735   378   V: 7079328-7079705 Caenorhabditis elegans
Exon186743   1215   V: 7079752-7080966 Caenorhabditis elegans
Exon186752   161   V: 7081362-7081522 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:VC5.3b.3 7076349 7081522 1

1 Sequence

Length
4348

1 Sequence Ontology Term

Identifier Name Description
transcript