WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C54F6.13a.2 Sequence Name  C54F6.13a.2
Length (nt)  2134   Chromosome Location  V: 7540890-7545523
Chromosome . Primary Identifier  V Chromosome Location . Start  7540890
Chromosome Location . End  7545523 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C54F6.13a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003731 nhx-3 C54F6.13 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C54F6.13a C54F6.13a 2013   V: 7540959-7541123

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C54F6.13a.2 7540890 7545523 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon187877   234   V: 7540890-7541123 Caenorhabditis elegans
Exon187881   147   V: 7541331-7541477 Caenorhabditis elegans
Exon187884   238   V: 7541526-7541763 Caenorhabditis elegans
Exon187887   579   V: 7541834-7542412 Caenorhabditis elegans
Exon187890   102   V: 7542541-7542642 Caenorhabditis elegans
Exon187893   155   V: 7542691-7542845 Caenorhabditis elegans
Exon187896   290   V: 7542916-7543205 Caenorhabditis elegans
Exon187899   168   V: 7543362-7543529 Caenorhabditis elegans
Exon187902   82   V: 7543655-7543736 Caenorhabditis elegans
Exon187906   87   V: 7544752-7544838 Caenorhabditis elegans
Exon187907   52   V: 7545472-7545523 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C54F6.13a.2 7540890 7545523 -1

1 Sequence

Length
2134

1 Sequence Ontology Term

Identifier Name Description
transcript