WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:C54F6.13a Sequence Name  C54F6.13a
Length (nt)  2013   Chromosome Location  V: 7540959-7541123
Chromosome . Primary Identifier  V Chromosome Location . Start  7540959
Chromosome Location . End  7541123
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C54F6.13a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE32044 NHX-3, isoform a 75.5 670 Caenorhabditis elegans
 

Other

6 RNAi

WormBase ID
WBRNAi00107733
WBRNAi00107732
WBRNAi00043163
WBRNAi00012401
WBRNAi00030150
WBRNAi00115930

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:C54F6.13a 7540959 7541123 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003731 nhx-3 C54F6.13 Caenorhabditis elegans

10 Locations


Feature . Primary Identifier
Start End Strand
CDS:C54F6.13a 7540959 7541123 -1
CDS:C54F6.13a 7541331 7541477 -1
CDS:C54F6.13a 7541526 7541763 -1
CDS:C54F6.13a 7541834 7542412 -1
CDS:C54F6.13a 7542541 7542642 -1
CDS:C54F6.13a 7542691 7542845 -1
CDS:C54F6.13a 7542916 7543205 -1
CDS:C54F6.13a 7543362 7543529 -1
CDS:C54F6.13a 7543655 7543736 -1
CDS:C54F6.13a 7544752 7544838 -1

1 Sequence

Length
2013

1 Sequence Ontology Term

Identifier Name Description
CDS  

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C54F6.13a.2 C54F6.13a.2 2134   V: 7540890-7545523
Transcript:C54F6.13a.1 C54F6.13a.1 2082   V: 7540890-7544838