WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C54F6.13a.1 Sequence Name  C54F6.13a.1
Length (nt)  2082   Chromosome Location  V: 7540890-7544838
Chromosome . Primary Identifier  V Chromosome Location . Start  7540890
Chromosome Location . End  7544838 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C54F6.13a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003731 nhx-3 C54F6.13 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C54F6.13a C54F6.13a 2013   V: 7540959-7541123

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C54F6.13a.1 7540890 7544838 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon187878   234   V: 7540890-7541123 Caenorhabditis elegans
Exon187880   147   V: 7541331-7541477 Caenorhabditis elegans
Exon187883   238   V: 7541526-7541763 Caenorhabditis elegans
Exon187886   579   V: 7541834-7542412 Caenorhabditis elegans
Exon187889   102   V: 7542541-7542642 Caenorhabditis elegans
Exon187892   155   V: 7542691-7542845 Caenorhabditis elegans
Exon187895   290   V: 7542916-7543205 Caenorhabditis elegans
Exon187898   168   V: 7543362-7543529 Caenorhabditis elegans
Exon187901   82   V: 7543655-7543736 Caenorhabditis elegans
Exon187905   87   V: 7544752-7544838 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C54F6.13a.1 7540890 7544838 -1

1 Sequence

Length
2082

1 Sequence Ontology Term

Identifier Name Description
transcript