WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R07B5.9c.1 Sequence Name  R07B5.9c.1
Length (nt)  4624   Chromosome Location  V: 9846598-9859963
Chromosome . Primary Identifier  V Chromosome Location . Start  9846598
Chromosome Location . End  9859963 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R07B5.9c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00045419 lsy-12 R07B5.9 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R07B5.9c R07B5.9c 4614   V: 9846598-9847131

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R07B5.9c.1 9846598 9859963 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon193768   534   V: 9846598-9847131 Caenorhabditis elegans
Exon193771   738   V: 9847496-9848233 Caenorhabditis elegans
Exon193782   644   V: 9848415-9849058 Caenorhabditis elegans
Exon193793   178   V: 9849645-9849822 Caenorhabditis elegans
Exon193808   174   V: 9850207-9850380 Caenorhabditis elegans
Exon193821   103   V: 9850430-9850532 Caenorhabditis elegans
Exon193836   100   V: 9850726-9850825 Caenorhabditis elegans
Exon193851   398   V: 9850879-9851276 Caenorhabditis elegans
Exon193866   359   V: 9851803-9852161 Caenorhabditis elegans
Exon193881   192   V: 9852310-9852501 Caenorhabditis elegans
Exon193896   186   V: 9852545-9852730 Caenorhabditis elegans
Exon193921   101   V: 9853641-9853741 Caenorhabditis elegans
Exon193942   290   V: 9858476-9858765 Caenorhabditis elegans
Exon193946   431   V: 9858994-9859424 Caenorhabditis elegans
Exon193953   196   V: 9859768-9859963 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R07B5.9c.1 9846598 9859963 -1

1 Sequence

Length
4624

1 Sequence Ontology Term

Identifier Name Description
transcript