WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R07B5.9a.2 Sequence Name  R07B5.9a.2
Length (nt)  3983   Chromosome Location  V: 9846598-9856416
Chromosome . Primary Identifier  V Chromosome Location . Start  9846598
Chromosome Location . End  9856416 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R07B5.9a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00045419 lsy-12 R07B5.9 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R07B5.9a R07B5.9a 3741   V: 9846598-9847131

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R07B5.9a.2 9846598 9856416 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon193821   534   V: 9846598-9847131 Caenorhabditis elegans
Exon193825   738   V: 9847496-9848233 Caenorhabditis elegans
Exon193836   644   V: 9848415-9849058 Caenorhabditis elegans
Exon193847   178   V: 9849645-9849822 Caenorhabditis elegans
Exon193862   174   V: 9850207-9850380 Caenorhabditis elegans
Exon193873   103   V: 9850430-9850532 Caenorhabditis elegans
Exon193888   100   V: 9850726-9850825 Caenorhabditis elegans
Exon193903   398   V: 9850879-9851276 Caenorhabditis elegans
Exon193918   359   V: 9851803-9852161 Caenorhabditis elegans
Exon193933   192   V: 9852310-9852501 Caenorhabditis elegans
Exon193948   186   V: 9852545-9852730 Caenorhabditis elegans
Exon193963   135   V: 9853371-9853505 Caenorhabditis elegans
Exon193974   101   V: 9853641-9853741 Caenorhabditis elegans
Exon193995   141   V: 9856276-9856416 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R07B5.9a.2 9846598 9856416 -1

1 Sequence

Length
3983

1 Sequence Ontology Term

Identifier Name Description
transcript