WormMine: Gene WBGene00044974

• WormBase Gene ID: WBGene00044974
• Gene Name: C27H6.5
• Sequence Name: C27H6.5
• Organism: Caenorhabditis elegans
• Automated Description: Enriched in AFD and neurons based on RNA-seq studies. Is affected by several genes including ptrn-1; rsr-2; and ilc-17.1 based on RNA-seq studies.
• Biotype: SO:0001267
• Genetic Position: :±
• Length (nt): 68

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00044974

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:C27H6.5	C27H6.5	68	V: 9970204-9970271

Other

0 CDSs

1 RNAi Result

• WBRNAi00063263

8 Allele

• gk963301
• gk964351
• gk962860
• gk964304
• gk963572
• gk964400
• gk963573
• md134

1 Chromosome

• WormBase ID: V
• Organism: Caenorhabditis elegans
• Length (nt): 20924180

1 Chromosome Location

• Feature . Primary Identifier: WBGene00044974
• Start: 9970204
• End: 9970271
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

0 Downstream Intergenic Region

9 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Neuronally enriched transcripts according to a comparison of neuronal nuclei IP samples to total nuclei using isolation of nuclei from tagged specific cell types (INTACT) technology.	DESEQ2, fold change > 2 and FDR < 0.01.	WBPaper00062103:neuron_enriched
	Transcripts depleted in purified oocyte P bodies comparing to in whole oocytes.	DESeq2, FDR < 0.05, fold change > 2.	WBPaper00065975:P-body_vs_oocyte_depleted
	Transcripts depleted in purified oocyte P bodies comparing to in the whole animal.	DESeq2, FDR < 0.05, fold change > 2.	WBPaper00065975:P-body_vs_WholeAnimal_depleted
	Transcripts that showed significantly increased expression in ilc-17.1(syb5296) comparing to in N2 animals at L4 larva stage.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066594:ilc-17.1(syb5296)_upregulated
Temperature Shift: 25C vs 15C for 16 hours at L4 larva stage.	Transcripts that showed significantly increased expression in AFD neurons comparing to in whole animals.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00065158:AFD_enriched
	mRNAs that showed significantly decreased expression in polysomal fractions in daf-2(e1370) comparing to in daf-2(e1370);daf-16(mu86), according to RNAseq study.	Differentially expressed genes were determined using cuffdiff across all pairs.	WBPaper00046337:polysomal_daf-2_vs_daf-2;daf-16_downregulated
	mRNAs that showed significantly decreased expression in polysomal fractions in N2 comparing to in daf-2(e1370), according to RNAseq study.	Differentially expressed genes were determined using cuffdiff across all pairs.	WBPaper00046337:polysomal_N2_vs_daf-2_downregulated
	Genes that showed significantly increased expression level in rsr-2(RNAi) animals comparing to in gfp(RNAi) control, according to RNAseq analysis.	This analysis uses Cufflinks-Cuffdiff to quantify and identify transcripts with a significant level of expression between different conditions.	WBPaper00042477:rsr-2(RNAi)_upregulated_RNAseq
	Transcripts that showed significantly increased expression in ptrn-1(tm5597) comparing to in N2	DESeq2 1.14.1, fold change > 1.5, p-value < 0.01.	WBPaper00056039:ptrn-1(tm5597)_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00044974
• Start: 9970204
• End: 9970271
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 68

1 Sequence Ontology Term