WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T27F2.2a.1 Sequence Name  T27F2.2a.1
Length (nt)  3420   Chromosome Location  V: 11631440-11637206
Chromosome . Primary Identifier  V Chromosome Location . Start  11631440
Chromosome Location . End  11637206 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T27F2.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012100 sipa-1 T27F2.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T27F2.2a T27F2.2a 2988   V: 11631872-11631940

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T27F2.2a.1 11631440 11637206 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon199114   501   V: 11631440-11631940 Caenorhabditis elegans
Exon199119   141   V: 11632132-11632272 Caenorhabditis elegans
Exon199132   142   V: 11632320-11632461 Caenorhabditis elegans
Exon199153   141   V: 11632527-11632667 Caenorhabditis elegans
Exon199156   462   V: 11632712-11633173 Caenorhabditis elegans
Exon199169   241   V: 11633252-11633492 Caenorhabditis elegans
Exon199182   138   V: 11633542-11633679 Caenorhabditis elegans
Exon199195   468   V: 11633738-11634205 Caenorhabditis elegans
Exon199208   265   V: 11634253-11634517 Caenorhabditis elegans
Exon199221   122   V: 11634565-11634686 Caenorhabditis elegans
Exon199234   576   V: 11634797-11635372 Caenorhabditis elegans
Exon199247   223   V: 11636984-11637206 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T27F2.2a.1 11631440 11637206 -1

1 Sequence

Length
3420

1 Sequence Ontology Term

Identifier Name Description
transcript