WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R13H4.1.1 Sequence Name  R13H4.1.1
Length (nt)  4102   Chromosome Location  V: 11831197-11843728
Chromosome . Primary Identifier  V Chromosome Location . Start  11831197
Chromosome Location . End  11843728 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R13H4.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011261 nphp-4 R13H4.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R13H4.1 R13H4.1 3918   V: 11831278-11831358

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:R13H4.1.1 11831197 11843728 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon199829   162   V: 11831197-11831358 Caenorhabditis elegans
Exon199830   168   V: 11831402-11831569 Caenorhabditis elegans
Exon199831   146   V: 11832414-11832559 Caenorhabditis elegans
Exon199839   128   V: 11835958-11836085 Caenorhabditis elegans
Exon199870   105   V: 11838027-11838131 Caenorhabditis elegans
Exon199871   634   V: 11838177-11838810 Caenorhabditis elegans
Exon199872   396   V: 11838990-11839385 Caenorhabditis elegans
Exon199875   277   V: 11840312-11840588 Caenorhabditis elegans
Exon199876   181   V: 11840631-11840811 Caenorhabditis elegans
Exon199877   873   V: 11841010-11841882 Caenorhabditis elegans
Exon199878   137   V: 11841944-11842080 Caenorhabditis elegans
Exon199879   188   V: 11842250-11842437 Caenorhabditis elegans
Exon199880   191   V: 11842487-11842677 Caenorhabditis elegans
Exon199881   76   V: 11842727-11842802 Caenorhabditis elegans
Exon199882   82   V: 11843197-11843278 Caenorhabditis elegans
Exon199883   129   V: 11843323-11843451 Caenorhabditis elegans
Exon199884   229   V: 11843500-11843728 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:R13H4.1.1 11831197 11843728 -1

1 Sequence

Length
4102

1 Sequence Ontology Term

Identifier Name Description
transcript