WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F57F5.5a.3 Sequence Name  F57F5.5a.3
Length (nt)  3365   Chromosome Location  V: 12014383-12032079
Chromosome . Primary Identifier  V Chromosome Location . Start  12014383
Chromosome Location . End  12032079 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F57F5.5a.3

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004032 pkc-1 F57F5.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F57F5.5a F57F5.5a 2124   V: 12015456-12015602

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F57F5.5a.3 12014383 12032079 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon200342   1220   V: 12014383-12015602 Caenorhabditis elegans
Exon200349   147   V: 12016147-12016293 Caenorhabditis elegans
Exon200354   328   V: 12016338-12016665 Caenorhabditis elegans
Exon200359   155   V: 12016865-12017019 Caenorhabditis elegans
Exon200364   308   V: 12017067-12017374 Caenorhabditis elegans
Exon200369   61   V: 12017733-12017793 Caenorhabditis elegans
Exon200374   112   V: 12018283-12018394 Caenorhabditis elegans
Exon200379   259   V: 12018498-12018756 Caenorhabditis elegans
Exon200384   204   V: 12019234-12019437 Caenorhabditis elegans
Exon200398   196   V: 12023603-12023798 Caenorhabditis elegans
Exon200402   108   V: 12023849-12023956 Caenorhabditis elegans
Exon200406   121   V: 12024040-12024160 Caenorhabditis elegans
Exon200412   146   V: 12031934-12032079 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F57F5.5a.3 12014383 12032079 -1

1 Sequence

Length
3365

1 Sequence Ontology Term

Identifier Name Description
transcript