WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C27A7.5a.1 Sequence Name  C27A7.5a.1
Length (nt)  2325   Chromosome Location  V: 12154867-12162320
Chromosome . Primary Identifier  V Chromosome Location . Start  12154867
Chromosome Location . End  12162320 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C27A7.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007756 C27A7.5 C27A7.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C27A7.5a C27A7.5a 2142   V: 12155027-12155215

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C27A7.5a.1 12154867 12162320 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon200955   349   V: 12154867-12155215 Caenorhabditis elegans
Exon200958   116   V: 12155264-12155379 Caenorhabditis elegans
Exon200962   113   V: 12155488-12155600 Caenorhabditis elegans
Exon200966   256   V: 12155648-12155903 Caenorhabditis elegans
Exon200970   70   V: 12155962-12156031 Caenorhabditis elegans
Exon200974   198   V: 12156284-12156481 Caenorhabditis elegans
Exon200978   215   V: 12156531-12156745 Caenorhabditis elegans
Exon200982   415   V: 12156796-12157210 Caenorhabditis elegans
Exon200986   155   V: 12157259-12157413 Caenorhabditis elegans
Exon200990   127   V: 12158049-12158175 Caenorhabditis elegans
Exon200996   140   V: 12160298-12160437 Caenorhabditis elegans
Exon201000   93   V: 12160859-12160951 Caenorhabditis elegans
Exon201006   78   V: 12162243-12162320 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C27A7.5a.1 12154867 12162320 -1

1 Sequence

Length
2325

1 Sequence Ontology Term

Identifier Name Description
transcript